One of the biggest problems with trying to make a sky ecosystem in an earthlike atmosphere is that there's just not a lot of nutrients in the sky; most of it comes from seaspray. Our sky plants are fairly slow-growing as a result. But I've been working on an idea for a way to bring a ton of nutrients up there really, really fast.

The hairy sky phlyer pees out of its skin and all over its trichomes, which then float through the air after being shed. That right there is conveniently packaged and dried nitrogenous compounds that can be taken up by sky flora, allowing them to grow a lot faster if there's a lot of it.
Right now, the hairy sky phlyer eats stuff from the sky ecosystem. Therefore, it isn't really giving back more than it takes. But perhaps a descendant could.
I have confidence that anything in Serina is probably biologically feasible, therefore I'm gonna take inspiration from a species there. The shadowskimmer is a giant bird that flies eternally, skimming for fish by night and soaring fast asleep at stratospheric heights by day. The hairy sky phlyer is much like the shadowskimmer in that it almost never lands and is able to reproduce without a nest; perhaps a descendant converges on it, swooping lower and lower for mistswarmers until it begins to dip its lower jaw into the ocean itself, causing it to incidentally start catching miniswarmers, krillpedes, and gilltails. As this is a much better food source than aeroplankton, I think it would quickly begin to evolve skim-feeding adaptations. It would be able to reproduce a lot more often thanks to the increased nutritional intake, resulting in a much larger population. This would also make it able to produce more trichomes, which are shed more often to remove the increased amount of waste. And as it soars by day, trichomes containing nitrogenous compounds from its urine fill the atmosphere to get caught and utilized by the sky plants.
Someone on a spec server I'm on likened this concept to marine snow, but in the sky. It would likely become a keystone species.